GgaEX1038174 @ galGal4
Exon Skipping
Gene
ENSGALG00000000733 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr1:192365316-192367030:-
Coord C1 exon
chr1:192366840-192367030
Coord A exon
chr1:192366163-192366287
Coord C2 exon
chr1:192365316-192365473
Length
125 bp
Sequences
Splice sites
3' ss Seq
GACAACTTTTCATCCCACAGGCA
3' ss Score
9.72
5' ss Seq
TAGGTGATT
5' ss Score
4.02
Exon sequences
Seq C1 exon
TGGGAGAAGAATCTGGGTTCCTCAGCTTCCTCAAAGGAGATCTCATAGTTCTTGACCAAGACACAGGAGAACATGTGATGAATTCAGGGTGGGCGAATGGATTCAATGAACGAACCAAGCAGAAAGGGGATTTCCCAACAGATTCTGTCTATGTTTTGCCTACTGTCACCATGCCTCCCCTGGAGATCGTG
Seq A exon
GCACTGGTTACAATGACCCCTGACCAACGACAGGATGTTATCAGAACCTCCCAGATGGCAATTTCAGACAGCGAAGAGAGAGTGAAGCCATACACCTTGGAGGAATTTTCCTATGATTATTTTAG
Seq C2 exon
GCCTCCCCCTAAGCACACCCTGAGCAGAGTTATGATCACCAAGAGCCGTGGAAAGGACAAGCTGTGGTGTTACACCCGGGAGCCCATCAAGCAGCCCCTGCTGAAGAAGATCCTGGGTAGCGAGGAGCTGTCCCAGGAAGCTTGCATGGCCTTCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000733_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.141 A=0.190 C2=0.056
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGTTCCTCAGCTTCCTCAA
R:
ACCACAGCTTGTCCTTTCCAC
Band lengths:
246-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]