DreEX6084379 @ danRer10
Exon Skipping
Gene
ENSDARG00000044632 | myo7ab
Description
myosin VIIAb [Source:ZFIN;Acc:ZDB-GENE-091110-4]
Coordinates
chr21:22260040-22261160:+
Coord C1 exon
chr21:22260040-22260230
Coord A exon
chr21:22260480-22260604
Coord C2 exon
chr21:22261007-22261160
Length
125 bp
Sequences
Splice sites
3' ss Seq
TCTGTTTGTGTTTCTTGCAGTCA
3' ss Score
10.13
5' ss Seq
CAGGTGCTA
5' ss Score
2.93
Exon sequences
Seq C1 exon
CTGGGCAAGATGCTTCGTTCCTGAGATTCTCAAAGGGAGATCTGATCTTTCTGGATGAGCACACTGGAGAACAGGTCCTGACTTCAGGCTGGGCTCATGGGGTCAATGACCGAACCAAGAAGAGAGGAGACTTTCCTGCGGACAATGTCTATGTGCTGCCCACCATCACCAGGCCACAGTATGATATTGTG
Seq A exon
TCATTGATCATCATGTCTCCAGACCAGCGTAAGGACTCTGTAAATTTGTCCCAGCAGAATCTGCTGGACAGTGGGGAGAAAGTCCAGCCGTACACTTTAGAGGAGTTCTCCTACGATCACTTCAG
Seq C2 exon
ACCACCTTCCAAGAGCACCCTGAGCCGCGTGATCATCAATAAAGGTAGAGGGAAGGATAAAATCTGGTGCTGCACCAGAGAACCTCTGAAACAGCCTCTGCTGAAAAAAATCCTCAGTCATGAAGAGCTGAGCCAGGACGCCTGCCAGGCCTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044632-'39-38,'39-37,40-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=0.117 C2=0.019
Domain overlap (PFAM):
C1:
PF0001823=SH3_1=PD(92.0=71.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGATGAGCACACTGGAGA
R:
GCAGAGGCTGTTTCAGAGGTT
Band lengths:
243-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]