BtaEX6060071 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003955 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr15:57377061-57379263:+
Coord C1 exon
chr15:57377061-57377237
Coord A exon
chr15:57377688-57377777
Coord C2 exon
chr15:57379136-57379263
Length
90 bp
Sequences
Splice sites
3' ss Seq
GACCCTTGTTTGTCCTGCAGGCC
3' ss Score
10.64
5' ss Seq
GAGGTGGGA
5' ss Score
4.3
Exon sequences
Seq C1 exon
GCGGCCCTGGCAGTCTGGATCACCATCCTCCGGTTCATGGGGGACCTCCCAGAGCCCAGGTACCACACGGCCATGAGTGACGGCAGCGAGAAGATTCCCGTGATGACCAAGATTTACGAGACCCTGGGCAAGAAGACCTACAAGAGGGAGCTGCAGGCCCTGCAGGGCGAGGGTGAG
Seq A exon
GCCCAGCTCCCCGATGGGCAGAAGAAGAGCAGTGTGAGGCACAAGCTGGTGCACTTGACCTTGAAAAAGAAGTCCAAACTGACGGAGGAG
Seq C2 exon
GTGACCAAGAGGCTGCATGATGGGGAGTCCACGGTGCAGGGCAACAGCATGCTGGAGGACCGGCCCACCTCCAACCTGGAGAAGCTGCACTTCATCATTGGCAACGGCATCCTGCGGCCAGCACTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003955-'26-26,'26-25,27-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.305 A=0.300 C2=0.465
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0078412=MyTH4=PU(18.9=46.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATTTACGAGACCCTGGGCA
R:
TGCCAATGATGAAGTGCAGCT
Band lengths:
171-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]