RnoEX0057469 @ rn6
Exon Skipping
Gene
ENSRNOG00000013641 | Myo7a
Description
myosin VIIA [Source:RGD Symbol;Acc:628830]
Coordinates
chr1:163024377-163026149:-
Coord C1 exon
chr1:163025973-163026149
Coord A exon
chr1:163025406-163025495
Coord C2 exon
chr1:163024377-163024504
Length
90 bp
Sequences
Splice sites
3' ss Seq
TCCCTGTGACTATTTCACAGGCC
3' ss Score
7.7
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
GCGGCACTGGCTGTCTGGATCACCATCCTCCGGTTCATGGGGGACCTCCCAGAGCCCAAGTACCACACAGCCATGAGCGATGGCAGTGAGAAGATCCCTGTGATGACTAAGATCTATGAGACCCTGGGCAAGAAGACATACAAGAGGGAGCTGCAGGCCCTGCAGGGCGAGGGCGAG
Seq A exon
GCCCAGCTCTCTGAGGGGCAGAAGAAGACCAGTGTGAAACACAAGTTGGTACACTTGACACTGAAGAAGAAGTCCAAACTCACAGAAGAG
Seq C2 exon
GTGACCAAGAGGCTGCATGATGGGGAGTCCATGGTACAGGGCAACAGCATGCTGGAGGACCGGCCCACCTCAAATCTAGAGAAGCTGCACTTCATCATTGGCAACGGTATCCTGCGACCTGCACTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013641-'31-30,'31-29,32-30
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.288 A=0.300 C2=0.395
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0078412=MyTH4=PU(18.9=46.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACCCTGGGCAAGAAGACAT
R:
GCAGGATACCGTTGCCAATGA
Band lengths:
174-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]