GgaEX6006877 @ galGal4
Exon Skipping
Gene
ENSGALG00000000733 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr1:192375824-192379258:-
Coord C1 exon
chr1:192379082-192379258
Coord A exon
chr1:192377199-192377288
Coord C2 exon
chr1:192375824-192375951
Length
90 bp
Sequences
Splice sites
3' ss Seq
CTCTGTTTCTTGCTTTGCAGAGT
3' ss Score
10.64
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GCAGCACTTGCTGTGTGGATCACTATCCTCCGTTTCATGGGAGACCTCCCTGAGCCAAAATATCATACGGCCATGAGTGATGGTGGTGAGAAGATACCAGTGATGACAAAAATCTATGAAACTCTTGGGAAGAAGACTTATAAGAAAGAACTGCAGGCTCTGCAGGGAGAAGGAGAG
Seq A exon
AGTACTCACATTGACGGGCACAAGAAGAACAGTGTGCGGCACAAACTGGTCTCCTTAACACTCAAGAAGAAATCCAAACTGACAGAGGAG
Seq C2 exon
GTAACAAAGAGACTTCATGACGGGGAGTCAACACTCCAAGGTAATAGCATGCTTGAAGACCGGCCCACCTCCAACCTGGAGAAGCTCCATTTCATTATTGGTAATGGCATCCTCAGGCCAGCATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000733-'34-37,'34-35,35-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.288 A=0.308 C2=0.465
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0078412=MyTH4=PU(18.9=46.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGAGTGATGGTGGTGAGA
R:
GCCGGTCTTCAAGCATGCTAT
Band lengths:
171-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]