DreEX0048762 @ danRer10
Exon Skipping
Gene
ENSDARG00000099871 | myo7aa
Description
myosin VIIAa [Source:ZFIN;Acc:ZDB-GENE-020709-1]
Coordinates
chr18:3146803-3150545:+
Coord C1 exon
chr18:3146803-3146979
Coord A exon
chr18:3147638-3147727
Coord C2 exon
chr18:3150418-3150545
Length
90 bp
Sequences
Splice sites
3' ss Seq
CGTTTGTCTGTCTGCTGCAGAAC
3' ss Score
10.15
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
Exon sequences
Seq C1 exon
GCGGCTCTGGCCGTGTGGATCACCGTCCTGCGCTTCATGGGTGACCTTCCCGAACCCAAATACCACACGGCCATCAGCGACGGCAGCGAGAAGATCCCTGTCATGACCAAAATCTACGAGACACTCGGAAAGAAAACCTACAAGAGGGAACTGCAGGCACTGCAGGGAGAAGGAGAG
Seq A exon
AACACTAACATTGAGAGTCACAAGAAGAGCAGCGTGCGGCACAAACTGGTGTCGCTCACCCTGAAGAAGAAGTCTAAAATTACAGAGGAG
Seq C2 exon
GTAACCAAGCGTTTAAATGACGGGGAATACACTGTTCATGGAAACAGCATGTTGGAGGATCGACCCACGTCCAATCTGGAGAAACTGCACTTTATCATCGGCAACGGCATCCTGCGTCCAGGCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099871-'26-26,'26-25,27-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.271 A=0.267 C2=0.163
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0078412=MyTH4=PU(18.9=46.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGAGAAGATCCCTGTCATGA
R:
TTCTCCAGATTGGACGTGGGT
Band lengths:
176-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]