DreEX6084389 @ danRer10
Exon Skipping
Gene
ENSDARG00000044632 | myo7ab
Description
myosin VIIAb [Source:ZFIN;Acc:ZDB-GENE-091110-4]
Coordinates
chr21:22248842-22252881:+
Coord C1 exon
chr21:22248842-22249018
Coord A exon
chr21:22251355-22251444
Coord C2 exon
chr21:22252754-22252881
Length
90 bp
Sequences
Splice sites
3' ss Seq
GATTTCTTCATTGTTTGCAGAGT
3' ss Score
7.69
5' ss Seq
GAGGTCTGT
5' ss Score
5.39
Exon sequences
Seq C1 exon
GCTGCTCTGGCTGTGTGGATCACTGTGTTGAGGTTTATGGGAGATCTTCCAGAACCCAAATATCATATCAGTATTAGTGATGGCAGTGAGAAGATACCAGTTATGACTAAAATCTATGAGACGTTGGGAAAGAGAACCTACAAAAGGGAGCTGCAGGCCTTGCAGGTGGATGAGGAG
Seq A exon
AGTTCCACAACTGACATCCAGAAGAGAAACAGTGTTCGTCATAAGCTGGTGTCCCTCACATTAAAGAAGAAATCAAAGCTTACAGAGGAG
Seq C2 exon
GTGACTAGAAGGCTGACGGACAGCGATTACAGTCTACAGGGAAATAGCATGCTGGAAGATCGACCCACCTCAAATTTAGAAAAGCTACACTTCATCATTGGCAATGGCATTTTACGTCCAGCTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044632-'27-26,'27-25,29-26=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.075 A=0.179 C2=0.074
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0078412=MyTH4=PU(18.9=46.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTACAAAAGGGAGCTGCAGG
R:
GAGAGCTGGACGTAAAATGCCA
Band lengths:
167-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]