BtaEX6060084 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003955 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr15:57351944-57353790:+
Coord C1 exon
chr15:57351944-57352086
Coord A exon
chr15:57353051-57353261
Coord C2 exon
chr15:57353655-57353790
Length
211 bp
Sequences
Splice sites
3' ss Seq
CCCCTGCTCCCTCCCTGCAGCTT
3' ss Score
12.79
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
Exon sequences
Seq C1 exon
GGCATCTATGGGCGGCTCTTCGTGTGGATCGTGGACAAGATCAATGCAGCCATTTATAAGCCCCCTTCCCAGGAAGTGAAGAACTCTCGCCGGTCCATTGGTCTCCTGGACATTTTTGGGTTCGAGAACTTTGCAGTGAACAG
Seq A exon
CTTTGAGCAGCTCTGCATCAACTTTGCCAATGAGCACCTGCAGCAGTTCTTCGTGCGGCACGTGTTCAAGCTGGAGCAGGAGGAGTATGACCTGGAGAGCATTGACTGGCTGCACATTGAGTTCACAGACAACCAGGATGCCCTGGACATGATCGCCAACAAACCCATGAACATCATCTCCCTCATCGATGAGGAGAGCAAGTTCCCCAAG
Seq C2 exon
GGCACGGACACCACCATGTTGCATAAGCTCAACTCCCAGCACAAGCTCAACTCGAACTACATTCCCCCCAAGAACAATTACGAGACCCAGTTTGGGATCAACCACTTTGCAGGCATCGTTTACTATGAGAGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003955-'13-13,'13-12,14-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.087
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.1=100)
A:
PF0006316=Myosin_head=FE(10.6=100)
C2:
PF0006316=Myosin_head=FE(6.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCTATGGGCGGCTCTTC
R:
TGACTCTCATAGTAAACGATGCCTG
Band lengths:
276-487
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]