GgaEX6006866 @ galGal3
Exon Skipping
Gene
ENSGALG00000000733 | MYO7A
Description
NA
Coordinates
chr1:198145454-198146879:-
Coord C1 exon
chr1:198146737-198146879
Coord A exon
chr1:198146083-198146293
Coord C2 exon
chr1:198145454-198145589
Length
211 bp
Sequences
Splice sites
3' ss Seq
CCTTCACTTTCTGCCCACAGTTT
3' ss Score
10.42
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
Exon sequences
Seq C1 exon
GGAATTTATGGGCGGCTCTTTGTTTGGATCGTGGAGAAGATCAATGCTGCAATTTACAGGCCTCCTTCACAGGAACTCAAAAGTGTTAGAAGATCCATTGGCCTCCTTGACATCTTTGGCTTTGAGAACTTCACTGTGAACAG
Seq A exon
TTTTGAGCAGCTGTGCATCAACTTTGCAAATGAGAACTTGCAGCAGTTCTTTGTGCGACACGTTTTTAAGCTGGAGCAGGAGGAGTACAACCTGGAGAACATCAACTGGCAGCACATCGAATTCACCGATAACCAGGATGCCTTGGACATGATTGCCATCAAACCCATGAACATCATCTCTCTCATTGATGAGGAGAGCAAGTTCCCCAAG
Seq C2 exon
GGTACAGATGCCACGATGTTACACAAGCTGAACTCCCAGCACAAGCTGAACACCAACTACATTCCTCCAAAGAATAACTATGAAACCCAGTTTGGCATTAATCATTTTGCTGGAATTGTTTACTACGAAACAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000733-'10-12,'10-11,11-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.043
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.1=100)
A:
PF0006316=Myosin_head=FE(10.6=100)
C2:
PF0006316=Myosin_head=FE(6.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAATTTATGGGCGGCTCTTTG
R:
TTGTTTCGTAGTAAACAATTCCAGCA
Band lengths:
276-487
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]