RnoEX6003825 @ rn6
Exon Skipping
Gene
ENSRNOG00000013641 | Myo7a
Description
myosin VIIA [Source:RGD Symbol;Acc:628830]
Coordinates
chr1:163043607-163045188:-
Coord C1 exon
chr1:163045046-163045188
Coord A exon
chr1:163044182-163044392
Coord C2 exon
chr1:163043607-163043742
Length
211 bp
Sequences
Splice sites
3' ss Seq
CGGTCCCCTACCCTCTGCAGCTT
3' ss Score
7.72
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
Exon sequences
Seq C1 exon
GGCATCTATGGGCGGCTCTTTGTATGGATTGTGGAGAAGATCAATGCAGCAATCTACAAACCACCCTCTCAGGAAGTGACGAACTCTCGCCGGTCCATCGGTCTCCTGGACATCTTTGGGTTTGAGAACTTCACCGTGAACAG
Seq A exon
CTTTGAGCAGCTCTGCATTAACTTTGCCAATGAGCACCTGCAGCAGTTTTTCGTGCGACACGTGTTCAAGTTGGAGCAGGAGGAGTATGACTTGGAGAGCATTGACTGGCTGCACATCGAGTTCACTGACAACCAGGAGGCCCTGGACATGATCGCCAACCGGCCTATGAACGTCATCTCCCTCATTGACGAAGAGAGCAAGTTCCCCAAG
Seq C2 exon
GGCACGGATGCCACCATGCTGCATAAGTTGAACTCACAGCACAGGCTCAATGCCAACTACGTCCCACCCAAGAACAGCCATGAGACCCAGTTTGGAATCAACCACTTTGCGGGCATTGTCTACTATGAGAGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013641-'15-14,'15-13,16-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.196
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.1=100)
A:
PF0006316=Myosin_head=FE(10.6=100)
C2:
PF0006316=Myosin_head=FE(6.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCTATGGGCGGCTCTTTG
R:
TGACTCTCATAGTAGACAATGCCC
Band lengths:
276-487
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]