DreEX6084398 @ danRer10
Exon Skipping
Gene
ENSDARG00000044632 | myo7ab
Description
myosin VIIAb [Source:ZFIN;Acc:ZDB-GENE-091110-4]
Coordinates
chr21:22238812-22241029:+
Coord C1 exon
chr21:22238812-22238954
Coord A exon
chr21:22240526-22240736
Coord C2 exon
chr21:22240894-22241029
Length
211 bp
Sequences
Splice sites
3' ss Seq
TTCATTCCTGCTGTGTGTAGCTT
3' ss Score
7.09
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GGAATCTATGGGAGGTTGTTTGTGTGGATAGTGGATAAAATCAATGCTACCATCTTCAGGGCTCCTTCCACAGAAAACAGGACCGTTCGCAGGTCTATAGGCCTGCTCGACATCTTCGGTTTCGAGAATTTCACTGTTAACAG
Seq A exon
CTTTGAGCAACTGTGCATCAACTTTGCTAACGAGAACCTGCAGCAGTTCTTCGTCCACCATGTTTTCAAGCTGGAGCAGGAGGAGTATAACCTGGAGGACATCAACTGGCAGGACATTGAGTTCACCGACAACCAGGACGCCCTAGACATGATTGCCATCAAACCTATGAATATCATTTCCCTCATTGATGAGGAGAGCAAGTTCCCAAAG
Seq C2 exon
GGAACAGATGCAACCATGCTGAACAAGCTAAACTCCCAGCACAAACTTAATACCAACTACATCCCGCCTAAGCACAGCCATGAGACTCAGTTCGGCATTCAGCACTTTGCTGGAGTGGTGCACTATGAAACTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044632-'12-11,'12-10,13-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.188
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.3=100)
A:
PF0006316=Myosin_head=FE(10.7=100)
C2:
PF0006316=Myosin_head=FE(6.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAATCTATGGGAGGTTGTTTGTGT
R:
TAGTTTCATAGTGCACCACTCCA
Band lengths:
276-487
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]