DreEX6063715 @ danRer10
Exon Skipping
Gene
ENSDARG00000099871 | myo7aa
Description
myosin VIIAa [Source:ZFIN;Acc:ZDB-GENE-020709-1]
Coordinates
chr18:3125306-3127875:+
Coord C1 exon
chr18:3125306-3125448
Coord A exon
chr18:3126981-3127191
Coord C2 exon
chr18:3127740-3127875
Length
211 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTGTCTCTCGTCCAGCTT
3' ss Score
9.43
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GGCATTTATGGCCGTTTGTTTGTGTGGATTGTTGAGAAAATCAACGCAGCCATTTATAAACCTCCATCTCTGGAGCTGAAAGCAGTGCGAAGATCCATCGGCCTATTAGATATCTTCGGCTTCGAGAACTTCATGGTTAACAG
Seq A exon
CTTTGAGCAGCTGTGCATTAACTTTGCCAATGAAAACCTGCAGCAGTTTTTCGTCCGTCATGTGTTCAAGCTGGAGCAGGAGGAATATAACCTGGAGAACATCAACTGGCAGCACATCGAGTTCACAGACAACCAGGACGCTTTAGACATGATCGCCATAAAGCCCATGAACATCATCTCGCTCATCGACGAGGAGAGCAAGTTTCCAAAG
Seq C2 exon
GGCACAGACACCACCATGCTGAACAAACTCAACTCTCAACACAAGCTCAACACAAACTACATCCCACCCAAAAACACCTATGAAACACAGTTCGGCATCCAGCACTTTGCTGGAGTGGTGTACTACGAGACCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099871-'13-12,'13-11,14-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.082
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.1=100)
A:
PF0006316=Myosin_head=FE(10.6=100)
C2:
PF0006316=Myosin_head=FE(6.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCATTTATGGCCGTTTGTTTGT
R:
TGGTCTCGTAGTACACCACTCC
Band lengths:
276-487
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]