BtaEX6060088 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003955 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr15:57348080-57350529:+
Coord C1 exon
chr15:57348080-57348193
Coord A exon
chr15:57349581-57349734
Coord C2 exon
chr15:57350453-57350529
Length
154 bp
Sequences
Splice sites
3' ss Seq
TTCCAACTTCCTGCCACCAGGGT
3' ss Score
7.61
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
Exon sequences
Seq C1 exon
GCTCCAGATGAAAGGAATTACCACGTGTTCTACTGCATGCTGGAGGGCATGAATGAGGAGCAGAAGAAGAAGCTGGGCCTGGGCCAGGCCACGGACTATAACTACTTGGCCATG
Seq A exon
GGTAACTGCGTAATCTGTGAGGGCCGCGAGGACAGCCAGGAATATGCCAACATCCGCTCAGCCATGAAGGTGCTCATGTTCACGGACACGGAGAACTGGGAGATCTCGAAGCTGCTAGCTGCCATCCTGCATCTGGGCAACCTGCAGTATGAGG
Seq C2 exon
ACCGCACGTTTGAAAACCTGGATGCCTGCGAGGTCCTCTTCTCGCCATCCCTGGCCACAGCCGCGTCCTTGCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003955-'8-9,'8-8,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.6=100)
A:
PF0006316=Myosin_head=FE(7.7=100)
C2:
PF0006316=Myosin_head=FE(3.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGATGAAAGGAATTACCACGT
R:
GGATGGCGAGAAGAGGACCTC
Band lengths:
162-316
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]