RnoEX6003821 @ rn6
Exon Skipping
Gene
ENSRNOG00000013641 | Myo7a
Description
myosin VIIA [Source:RGD Symbol;Acc:628830]
Coordinates
chr1:163046192-163048807:-
Coord C1 exon
chr1:163048694-163048807
Coord A exon
chr1:163047148-163047301
Coord C2 exon
chr1:163046192-163046268
Length
154 bp
Sequences
Splice sites
3' ss Seq
CCTCCCCGCTCTGGCCCCAGGGT
3' ss Score
10.26
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
Exon sequences
Seq C1 exon
GCCCCTGATGAGAGGAACTATCACGTGTTCTACTGTATGCTGGAGGGCATGAATGAGGAGGAGAAGAAGAAGCTAGGCCTAGGCCAGGCCGCTGACTACAACTATTTGGCAATG
Seq A exon
GGTAACTGCATCACCTGTGAGGGCCGTGTGGACAGTCAGGAGTATGCCAACATCCGCTCAGCCATGAAGGTGCTCATGTTCACAGACACGGAGAACTGGGAGATCTTGAAGCTTCTGGCCGCCATCCTACACATGGGCAATCTGCAGTACGAGG
Seq C2 exon
CCCGTACGTTTGAGAACTTGGATGCGTGCGAAGTCCTCTTCTCCCCATCGCTGGCCACGGCAGCTTCTCATCTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013641-'11-9,'11-8,12-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.6=100)
A:
PF0006316=Myosin_head=FE(7.7=100)
C2:
PF0006316=Myosin_head=FE(3.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCCTGATGAGAGGAACTAT
R:
CGAGATGAGAAGCTGCCGTG
Band lengths:
189-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]