GgaEX6006864 @ galGal3
Exon Skipping
Gene
ENSGALG00000000733 | MYO7A
Description
NA
Coordinates
chr1:198148580-198151116:-
Coord C1 exon
chr1:198151003-198151116
Coord A exon
chr1:198149872-198150025
Coord C2 exon
chr1:198148580-198148656
Length
154 bp
Sequences
Splice sites
3' ss Seq
CAACATCCTTGCCTTCCCAGGGT
3' ss Score
7.74
5' ss Seq
AAAGGTAAA
5' ss Score
-15.17
Exon sequences
Seq C1 exon
GCCCAGGACGAGAGGAATTACCACGTGTTCTACTGCATGCTGAGAGGAATGACAATGGAGCAGAAGAAGAAGCTGGGTCTTGGGAAAGCCACAGACTACAACTATCTTGCAATG
Seq A exon
GGTAACTGCACAACCTGCGATGGCAGAGATGACAGCAAGGAATATGCCAACATCCGCTCTGCCATGAAGGTCCTTATGTTCACCGACACAGAAAACTGGGAGATCTCCAAGCTGCTGGCTGCCATCCTGCACATGGGGAACCTGAAGTATGAAA
Seq C2 exon
CTCGGACCTATGACAACCTGGATGCTTGCGAGGTTGTGCAGTCAGCGTCACTGATCACTGCAGCATCATTGCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000733-'6-8,'6-7,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.6=100)
A:
PF0006316=Myosin_head=FE(7.7=100)
C2:
PF0006316=Myosin_head=FE(3.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCAGGACGAGAGGAATTAC
R:
ATGCTGCAGTGATCAGTGACG
Band lengths:
180-334
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]