MmuEX6012387 @ mm9
Exon Skipping
Gene
ENSMUSG00000030761 | Myo7a
Description
myosin VIIA [Source:MGI Symbol;Acc:MGI:104510]
Coordinates
chr7:105243177-105245731:-
Coord C1 exon
chr7:105245618-105245731
Coord A exon
chr7:105244139-105244292
Coord C2 exon
chr7:105243177-105243253
Length
154 bp
Sequences
Splice sites
3' ss Seq
ATGCCCCCTCTCCTGCCCAGGGT
3' ss Score
7.74
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
Exon sequences
Seq C1 exon
GCCCCTGACGAGAGGAACTATCACGTGTTCTACTGTATGCTGGAGGGCATGAATGAGGAGGAGAAGAAGAAACTGGGCCTAGGCCAGGCCGCTGACTACAACTACTTGGCCATG
Seq A exon
GGTAACTGCATCACCTGTGAGGGCCGCGTGGACAGTCAGGAGTATGCCAACATCCGCTCTGCCATGAAGGTTCTCATGTTCACAGACACGGAGAACTGGGAGATCTCGAAGCTTCTGGCTGCCATCCTACACATGGGCAATCTGCAGTATGAGG
Seq C2 exon
CCCGGACATTTGAGAACTTGGATGCGTGTGAAGTCCTCTTCTCCCCATCGCTGGCCACGGCAGCTTCTCTGCTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030761-'17-15,'17-14,18-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.6=100)
A:
PF0006316=Myosin_head=FE(7.7=100)
C2:
PF0006316=Myosin_head=FE(3.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCCTGACGAGAGGAACTAT
R:
CAGAGAAGCTGCCGTGGC
Band lengths:
185-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: