BtaEX6060982 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020332 | OSBP
Description
oxysterol-binding protein 1 [Source:RefSeq peptide;Acc:NP_001192899]
Coordinates
chr15:84116415-84118547:-
Coord C1 exon
chr15:84118444-84118547
Coord A exon
chr15:84117317-84117412
Coord C2 exon
chr15:84116415-84116596
Length
96 bp
Sequences
Splice sites
3' ss Seq
TGGTTCTTTTCTTTTCATAGTCT
3' ss Score
7.98
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GGAGCATCCACTGTATTTTCCATGCGACTGGGCACCACTACACTTGGAAGAAAGTGACCACAACGGTGCACAACATCATCGTGGGCAAACTGTGGATTGACCAG
Seq A exon
TCTGGTGAAATTGACATTGTGAATCACAAGACGGGAGACAAGTGCAATCTCAAATTTGTTCCTTATAGCTACTTCTCTCGGGACGTAGCGAGAAAG
Seq C2 exon
GTGACGGGGGAGGTGACCGATGCCTCGGGGAGAGTTCACTTCGCGCTGCTGGGCACGTGGGATGAGAAAATGGACTGCTTCAAAGTGCAGCCGGTCCCCGGGGAGAACGGGGGTGACGCCCGGCAGCGCGGCCACGACGCGGAGGAGAGCAGGGTGCTGCTCTGGAAGCGGAACCCTTTACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020332-'11-17,'11-15,13-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.262
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(9.0=100)
A:
PF0123713=Oxysterol_BP=FE(8.2=100)
C2:
PF0123713=Oxysterol_BP=FE(15.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATTTTCCATGCGACTGGGC
R:
GCTGCACTTTGAAGCAGTCCA
Band lengths:
183-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]