DreEX6033559 @ danRer10
Exon Skipping
Gene
ENSDARG00000004634 | osbp
Description
oxysterol binding protein [Source:ZFIN;Acc:ZDB-GENE-090312-18]
Coordinates
chr1:52048403-52050764:+
Coord C1 exon
chr1:52048403-52048506
Coord A exon
chr1:52050329-52050424
Coord C2 exon
chr1:52050577-52050764
Length
96 bp
Sequences
Splice sites
3' ss Seq
CTGTGTTTCTCTCGCCTCAGTCA
3' ss Score
7.79
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GTTCTATTCACTGTATCTTTGAGAAGAGCAACAATCACTACACCTGGAAGAAAGTCACAACCACAGTGCACAATATCATAGTCGGGAAACTCTGGATAGATCAG
Seq A exon
TCAGGAGAAATAGACATCGTGAACCACAGAACGGGCGACCGCTGCCATCTCAAATTCGCCCCATACAGCTACTTCTCCAGAGACGTGGCCAGAAAG
Seq C2 exon
GTCACAGGGGTGGTGACGGATAAAGATGGGAAAGCACACTATGTTCTGTCCGGCACGTGGGATGAGAAGATGGAGTGCTCTCGGGTCATGCAGAGCAGTAGAGGAGGAGAGAACGGAGCCGATGGACGACAGAAAACCGTCTATCAGACACTCAAAGCCAAAGAGCTGTGGAGGAAGACACCGCTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004634-'16-15,'16-14,17-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.359
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(8.4=100)
A:
PF0123713=Oxysterol_BP=FE(7.7=100)
C2:
PF0123713=Oxysterol_BP=FE(15.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCACAACCACAGTGCACAA
R:
GCTCCGTTCTCTCCTCCTCTA
Band lengths:
171-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]