GgaEX7005079 @ galGal4
Exon Skipping
Gene
ENSGALG00000027392 | OSBP
Description
oxysterol binding protein [Source:HGNC Symbol;Acc:HGNC:8503]
Coordinates
chr5:505126-505719:+
Coord C1 exon
chr5:505126-505229
Coord A exon
chr5:505349-505444
Coord C2 exon
chr5:505538-505719
Length
96 bp
Sequences
Splice sites
3' ss Seq
CTCTGCGGTCTCTGTTGCAGTCG
3' ss Score
10.05
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
Exon sequences
Seq C1 exon
GCACCATCCACTGCGTCTTCCATGCGTCCGGCAACCACTACACGTGGAAAAAGGTCACCACCACCGTGCACAACATCATCGTGGGGAAGCTGTGGATCGACCAG
Seq A exon
TCGGGTGAGATTGAAATCGTCAACCACAAGACGGGCGATAAGTGCAACCTCAAGTTTGTCCCCTACAGCTACTTCTCCAGGGACGTGGCTAGGAAG
Seq C2 exon
GTCACGGGGGAGGTGATGGACCCTGCGGGGAAGGTGCACTTCCTCCTGCTGGGCACCTGGGACGAGAAGATGGACTGCTACAAGGTGGCAGCGGGCAGCGGCGACAACGGGGCTGAGGGCCGGCAGCGGCCGCACGAAGCGGAGGAGAGCCGCGTGCCGCTGTGGAAGAGGAACCAATTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027392-'12-14,'12-12,13-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.410
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(9.0=100)
A:
PF0123713=Oxysterol_BP=FE(8.2=100)
C2:
PF0123713=Oxysterol_BP=FE(15.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATCCACTGCGTCTTCCATG
R:
AGTCCATCTTCTCGTCCCAGG
Band lengths:
177-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]