RnoEX6006659 @ rn6
Exon Skipping
Gene
ENSRNOG00000021057 | Osbp
Description
oxysterol binding protein [Source:RGD Symbol;Acc:1308069]
Coordinates
chr1:228419202-228421965:+
Coord C1 exon
chr1:228419202-228419305
Coord A exon
chr1:228420519-228420614
Coord C2 exon
chr1:228421784-228421965
Length
96 bp
Sequences
Splice sites
3' ss Seq
TGATTCTTTTCACTTTACAGTCT
3' ss Score
8.7
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GTACCATCCACTGCATTTTCCACGCAACTGGGCACCATTACACTTGGAAAAAAGTTACCACAACAGTACACAACATTATTGTGGGCAAGTTGTGGATAGATCAG
Seq A exon
TCTGGTGAGATTGACATTGTAAATCACAAGACAGGAGACAAGTGTAATCTTAAATTTGTTCCTTATAGCTACTTCTCTCGGGATGTAGCAAGAAAG
Seq C2 exon
GTGACAGGTGAAGTGACAGACCCATCAGGAAAAGTTCACTTTGCCCTCCTGGGGACATGGGATGAGAAAATGGATTGTTTCAAAGTACAACCAGCCTCTGGGGAAAATGGAGGTGATGCTCGGCAGAGAGGCCATGAAGCAGAAGAAAGTAGGGTCATGCTATGGAAGAGGAATCCATTACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021057-'25-16,'25-14,27-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.443
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(9.0=100)
A:
PF0123713=Oxysterol_BP=FE(8.2=100)
C2:
PF0123713=Oxysterol_BP=FE(15.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCACTGCATTTTCCACGCA
R:
TTCTCATCCCATGTCCCCAGG
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]