BtaEX6062834 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000038281 | CSMD3
Description
CUB and Sushi multiple domains 3 [Source:HGNC Symbol;Acc:HGNC:19291]
Coordinates
chr14:54088847-54129556:+
Coord C1 exon
chr14:54088847-54089034
Coord A exon
chr14:54103037-54103231
Coord C2 exon
chr14:54129440-54129556
Length
195 bp
Sequences
Splice sites
3' ss Seq
ATATCAACATTACTTTACAGCAA
3' ss Score
5.79
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
TTTTAGCATAGAACCAAACTATGATTTCCTCTATATATATGATGGGCCAGACAGTAATAGTCCCTTGATTGGAAGTTTTCAAGACAGCAAATTACCGGAGAGGATAGAAAGCAGCTCAAATAACATGCATTTGGCTTTTCGGAGTGATGGATCTGTTAGTTACACTGGATTTCATTTAGAGTATAAAG
Seq A exon
CAAAACTCCGAGAGTCCTGCTTTGATCCAGGCAATATAATGAATGGCACCAGACTGGGAATGGATTATAAATTAGGGTCAACAGTAACCTATTACTGTGATGCTGGTTACATTCTTCAAGGATATTCAACACTCACCTGTATCATGGGAGATGATGGAAGACCTGGATGGAATAGAGTCTTACCAAGTTGTCATG
Seq C2 exon
CACCGTGTGGAAGTCGTTCAACAGGTTCAGAAGGCACTGTTCTATCACCAAACTATCCAAAAAATTACAGTGTGGGACATAATTGTGTTTATTCTATAGCAGTTCCCAAGGAGTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038281-'25-27,'25-26,26-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.000 C2=0.025
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(57.5=95.3)
A:
PF0008415=Sushi=WD(100=87.9)
C2:
PF0043115=CUB=PU(34.6=92.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCAGACAGTAATAGTCCCT
R:
ACTCCTTGGGAACTGCTATAGA
Band lengths:
258-453
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]