GgaEX6022117 @ galGal3
Exon Skipping
Gene
ENSGALG00000016111 | CSMD3
Description
NA
Coordinates
chr2:139102243-139130058:-
Coord C1 exon
chr2:139129871-139130058
Coord A exon
chr2:139119842-139120036
Coord C2 exon
chr2:139102243-139102359
Length
195 bp
Sequences
Splice sites
3' ss Seq
TATATTTTTCTCTTTTATAGCAA
3' ss Score
9.82
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
TTTCAGTATAGAACCAAATTATGATTTTCTTTATATTTATGATGGACCAGACAGTAACAGCCCACTGATTGGGAGCTTTCAAGATAGCAAGCTTCCAGAGAGGATAGAAAGCAGTTCAAATAACATGCATCTGGCTTTTCGGAGTGATGGATCTGTTAGTTTCACAGGATTCCACCTGGAGTACAAAG
Seq A exon
CAAAGCTACGTGAATCTTGCTTTGATCCTGGAAATATAATGAATGGAACAAGACTTGGAATGGACTATAAACTAGGATCAACTGTAACATATTACTGTGATGCTGGTTATGTTTTGCAAGGATATTTTACACTAACTTGCATCATGGGAGATGATGGAAGACCTGGGTGGAACAGGGCTCTACCCAGTTGTCATG
Seq C2 exon
CACCCTGTGGAAGTCGGTCAACAGGCTCTGAAGGAACTGTATTATCACCGAACTACCCCAAGAATTACAGTGTTGGTCACAGCTGTGTTTACTCTATCACTGTTCCTAAGGAATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016111-'30-31,'30-30,31-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.000 C2=0.025
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(57.5=95.3)
A:
PF0008415=Sushi=WD(100=87.9)
C2:
PF0043115=CUB=PU(34.6=92.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGACAGTAACAGCCCACT
R:
ACAGTGATAGAGTAAACACAGCTGT
Band lengths:
246-441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]