MmuEX6053511 @ mm10
Exon Skipping
Gene
ENSMUSG00000022311 | Csmd3
Description
CUB and Sushi multiple domains 3 [Source:MGI Symbol;Acc:MGI:2386403]
Coordinates
chr15:47820352-47847294:-
Coord C1 exon
chr15:47847107-47847294
Coord A exon
chr15:47838408-47838602
Coord C2 exon
chr15:47820352-47820468
Length
195 bp
Sequences
Splice sites
3' ss Seq
ATACTGACACTATTTTACAGCAA
3' ss Score
5.42
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
TTTTAGCATAGAACCAAACTATGACTTCCTCTACATATATGATGGCCCAGACAGTAATAGTCCATTGATTGGAAGTTTTCAAGACAGCAAGTTACCAGAAAGAATAGAGAGCAGCTCGAATACCATGCACTTGGCTTTTCGGAGTGATGGATCTGTCAGTTACACCGGATTTCATTTAGAGTATAAAG
Seq A exon
CAAAACTCCGGGAGTCCTGCTTTGATCCAGGAAATATAATGAATGGTACCAGACTTGGAATGGATTATAAATTGGGGTCAACAGTCACCTATTACTGTGATGCTGGCTATGTTCTCCAAGGTTATTCAACACTCACTTGTATCATGGGAGATGATGGAAGGCCTGGATGGAATAGAGTCCTACCAAGTTGTCATG
Seq C2 exon
CACCCTGTGGAAGTCGTTCAACAGGTTCAGAAGGCACAGTGCTATCACCAAACTACCCCAAAAATTACAGTGTGGACCACAATTGTGTTTATTCTATAGCAGTTCCCAAGGAGTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022311-'77-46,'77-45,79-46
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.000 C2=0.040
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(57.5=95.3)
A:
PF0008415=Sushi=WD(100=87.9)
C2:
PF0043115=CUB=PU(34.9=92.5)
Main Skipping Isoform:
ENSMUST00000100670fB8288
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATATATGATGGCCCAGACAGT
R:
AACACAATTGTGGTCCACACTGT
Band lengths:
245-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types