BtaEX6062837 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000038281 | CSMD3
Description
CUB and Sushi multiple domains 3 [Source:HGNC Symbol;Acc:HGNC:19291]
Coordinates
chr14:54051287-54075021:+
Coord C1 exon
chr14:54051287-54051413
Coord A exon
chr14:54053086-54053288
Coord C2 exon
chr14:54074830-54075021
Length
203 bp
Sequences
Splice sites
3' ss Seq
GATATATGGTTCTCCTACAGCCT
3' ss Score
6.97
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
CTGAATGTGGAGGTCGTTTTAAAGGAGAATCATCAGGAAGAATTTTATCTCCTGGTTATCCCTTTCCATATGACAATAATCTGCGTTGCATGTGGATGATTGAGGTAGATCCAGGAAACATTGTCAG
Seq A exon
CCTACAGTTTCTTGCTTTTGATACGGAAGCATCACATGATATACTCCGAGTTTGGGATGGTCCGCCTGAAAACGAGATGCTTTTAAAGGAAATCAGTGGGTCTCTGATTCCCGAAGGAATCCATAGCACTCTCAACGTAGTGACCATTCAGTTCGACACAGATTTTTATATCAGCAAATCTGGATTTGCAATTCAGTTTTCAA
Seq C2 exon
GTTCTGTTGCCACTGCGTGTCGTGACCCAGGGGTTCCCATGAACGGAACTCGAAATGGAGATGGACGAGAACCTGGAGACACTGTGGTTTTTCAGTGTGACCCAGGATATGAACTTCAAGGAGAGGAAAGAATAACCTGCATTCAGGTAGAAAATCGATACTTCTGGCAGCCCAGCCCACCAGTTTGTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038281-'21-22,'21-21,22-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.014 C2=0.277
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(37.4=93.0)
A:
PF0043115=CUB=PD(61.7=95.7)
C2:
PF0008415=Sushi=WD(100=87.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGAGGTCGTTTTAAAGGAGA
R:
TGGGCTGCCAGAAGTATCGAT
Band lengths:
296-499
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]