MmuEX6053507 @ mm10
Exon Skipping
Gene
ENSMUSG00000022311 | Csmd3
Description
CUB and Sushi multiple domains 3 [Source:MGI Symbol;Acc:MGI:2386403]
Coordinates
chr15:47857790-47883658:-
Coord C1 exon
chr15:47883532-47883658
Coord A exon
chr15:47881346-47881548
Coord C2 exon
chr15:47857790-47857981
Length
203 bp
Sequences
Splice sites
3' ss Seq
GATGTATGGCTTTCCCACAGCCT
3' ss Score
7.38
5' ss Seq
CAAGTAAGC
5' ss Score
7.47
Exon sequences
Seq C1 exon
CTGAATGTGGCGGCCGTTTCAAGGGAGAATCATCAGGAAGGATCTTGTCCCCTGGCTATCCCTTTCCATATGATAATAACCTTCGCTGCATGTGGATGATCGAAGTAGATCCAGGAAACATTGTAAG
Seq A exon
CCTACAGTTTCTTGCTTTCGATACAGAAGCCTCACATGATATACTCCGAGTTTGGGATGGTCCACCAGAAAACGAGATGCTATTAAAGGAAGTTAGTGGATCTCTTATTCCTGATGGAATTCACAGCACCCTCAACATAGTGACTATCCAATTTGATACGGACTTTTATATCAGCAAATCTGGATTCGCAATTCAGTTTTCAA
Seq C2 exon
GTTCAGTTGCAACTGCCTGTCGTGATCCAGGAGTCCCCATGAATGGGACACGGAATGGTGACGGACGAGAACCTGGGGACACTGTTGTCTTTCAGTGTGATCCTGGATATGAGCTTCAAGGACAAGAAAGAATAACCTGCATTCAGGTAGAAAATCGATACTTCTGGCAGCCCAGCCCACCAGTCTGTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022311-'71-40,'71-39,72-40
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.015 C2=0.277
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(37.4=93.0)
A:
PF0043115=CUB=PD(61.7=95.7)
C2:
PF0008415=Sushi=WD(100=87.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCCGTTTCAAGGGAGAATC
R:
CTGGGCTGCCAGAAGTATCGA
Band lengths:
292-495
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types