GgaEX6022113 @ galGal3
Exon Skipping
Gene
ENSGALG00000016111 | CSMD3
Description
NA
Coordinates
chr2:139136133-139145156:-
Coord C1 exon
chr2:139145030-139145156
Coord A exon
chr2:139144124-139144326
Coord C2 exon
chr2:139136133-139136324
Length
203 bp
Sequences
Splice sites
3' ss Seq
ATAACATGGTGTTCTCACAGCCT
3' ss Score
6.48
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
CTGAGTGTGGAGGCCGTTTTAAAGGAGAATCTTCAGGAAGAATCTTATCTCCTGGCTATCCTTTTCCCTATGATAACAATCTGCGTTGCATGTGGGTGATTGAAGTAGATCCAGGAAATATTGTCAG
Seq A exon
CCTCCAGTTTCTTGCTTTTGATACTGAGGCATCACATGATATTCTACGAGTTTGGGATGGACCACCTGAGAATGAGATGTTACTCAAGGAAATTAGTGGATCTCTAGTTCCTGAAGGCATTCACAGTACACTCAACATAGTAACAATCCAGTTTGACACAGATTTTTATATCAGCAAATCTGGGTTTGCCATACAGTTTTCAA
Seq C2 exon
GTTCTGTAGCTACTGCCTGCCGTGATCCTGGTGTCCCCATGAATGGAACTAGAAATGGGGATGGAAGAGAACCCGGAGACACTGTGATTTTTCAGTGTGACCCTGGATATGAATTGCAAGGAGATGAGAGGATAACCTGCATTCAGGTAGAAAATCGGTACTTCTGGCAGCCCAACCCACCAGTCTGCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016111-'26-27,'26-26,27-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.014 C2=0.262
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(37.4=93.0)
A:
PF0043115=CUB=PD(61.7=95.7)
C2:
PF0008415=Sushi=WD(100=87.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGTGTGGAGGCCGTTTTA
R:
GGCTGCCAGAAGTACCGATTT
Band lengths:
299-502
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]