BtaEX6063487 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013369 | COL14A1
Description
collagen, type XIV, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2191]
Coordinates
chr14:83949069-83954991:+
Coord C1 exon
chr14:83949069-83949198
Coord A exon
chr14:83951216-83951361
Coord C2 exon
chr14:83954862-83954991
Length
146 bp
Sequences
Splice sites
3' ss Seq
TAACAAATCTCCTCTTGCAGTTT
3' ss Score
7.98
5' ss Seq
GAGGTAACT
5' ss Score
8.77
Exon sequences
Seq C1 exon
GTGGTGGTGGATGGACGCGTATCTTCCACGGTGCTGAGAAACTTGATGTCTTTAACGGAATATCAGATAGCAGTCTTTGCCATATATGCTCACACGGCTAGTGAAGGCCTCCGGGGAACCGAAACCACAC
Seq A exon
TTTCTTTACCTATAGCTTCCGACCTTGAACTGTACGACGTGACTGAGAACAGTCTGAGGGCGAGATGGAACCCCGTGCCCGGAGCGTCCGGGTACCTGATCCTCTATGCTCCCCTCACGGAGGGCCTGGCCGGGGATGAAAAAGAG
Seq C2 exon
GTGAAAATTGGAGAGACCCACACAGATATTGAGCTGAGCGGGTTGTTGCCCAATACGGAATACACAGTCACGGTGTACGCTATGTTTGGAGAAGAAGCCAGTGACCCCGTTACGGGCCAGGAATCGACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013369-'12-20,'12-19,13-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.068 A=0.041 C2=0.205
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(43.8=79.5)
A:
PF0004116=fn3=PU(54.9=91.8)
C2:
PF0004116=fn3=PD(42.7=79.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGGACGCGTATCTTCCAC
R:
GTCGATTCCTGGCCCGTAAC
Band lengths:
250-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]