RnoEX6032275 @ rn6
Exon Skipping
Gene
ENSRNOG00000026415 | Col14a1
Description
collagen type XIV alpha 1 chain [Source:RGD Symbol;Acc:1305806]
Coordinates
chr7:95131599-95137263:+
Coord C1 exon
chr7:95131599-95131728
Coord A exon
chr7:95133191-95133336
Coord C2 exon
chr7:95137134-95137263
Length
146 bp
Sequences
Splice sites
3' ss Seq
CAAAGAGCCTCCTCTTGCAGTGG
3' ss Score
3.26
5' ss Seq
GAGGTAACT
5' ss Score
8.77
Exon sequences
Seq C1 exon
GTGGTGGCGGATGGAAGGGTGTCTTCCATAGTGTTGAAAAACTTGATGTCTTCAACCGAGTACCAGATAGCAGTGTTTGCAGTATCTGCCCACACGGCTAGTGAAGGCCTGCGGGGAACAGAGACCACAT
Seq A exon
TGGCCTTACCCATGGCTTCCGACCTCGAGCTGTATGATGTGACTGAGAACAGCATGCGAGTCAAGTGGGATGCAGTGCCTGGCGCCACAGGATATCTGATCCTCTATGCTCCTCTCACAGAAGGTCTGGCCGGAGATGAAAAAGAG
Seq C2 exon
ATGAAAATCGGTGAGACACACACAGACATTGAACTGAGTGGGCTATTCCCCAATACAGAATATACAGTCACTGTGTATGCCATGTTTGGAGAAGAGGCCAGTGACCCTGCTACAGGACAAGAGACAACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026415-'12-14,'12-12,13-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.068 A=0.082 C2=0.386
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(43.8=79.5)
A:
PF0004116=fn3=PU(54.9=91.8)
C2:
PF0004116=fn3=PD(42.7=79.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGGATGGAAGGGTGTCTT
R:
GGGTTGTCTCTTGTCCTGTAGC
Band lengths:
255-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]