GgaEX6022200 @ galGal4
Exon Skipping
Gene
ENSGALG00000016411 | col14A1
Description
collagen alpha-1(XIV) chain precursor [Source:RefSeq peptide;Acc:NP_990665]
Coordinates
chr2:136407476-136413033:+
Coord C1 exon
chr2:136407476-136407605
Coord A exon
chr2:136411444-136411589
Coord C2 exon
chr2:136412904-136413033
Length
146 bp
Sequences
Splice sites
3' ss Seq
CTGTCTCTTTTCTTCTGTAGTTG
3' ss Score
9.82
5' ss Seq
GAGGTAATG
5' ss Score
8.73
Exon sequences
Seq C1 exon
GTTGTGGTAGATGGAAGTTCATCAACGGCAGTTCTTAAAAACCTGATGTCTTTAACCGAATACCAGATCGCTGTATTTGCAATATACTCAAATGCTGCTAGTGAGGGCCTCCGTGGAACTGAAACTACAC
Seq A exon
TTGCCTTGCCAATGGCATCAGATCTGAAACTGTATGATGTGTCACACAGCAGCATGAGAGCTAAGTGGAATGGAGTAGCGGGTGCCACAGGTTACATGATCTTGTATGCTCCCCTGACAGAAGGGTTGGCTGCAGATGAAAAGGAG
Seq C2 exon
ATAAAAATTGGTGAGGCCTCAACTGAACTTGAACTGGATGGACTATTGCCGAATACAGAATATACAGTCACAGTTTATGCCATGTTTGGAGAAGAAGCTAGTGATCCCCTTACTGGACAAGAAACAACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016411-'17-24,'17-23,18-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=0.020 C2=0.205
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(43.8=79.5)
A:
PF0004116=fn3=PU(54.9=91.8)
C2:
PF0004116=fn3=PD(42.7=79.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAGTTCATCAACGGCAGT
R:
TTCTTGTCCAGTAAGGGGATCACT
Band lengths:
242-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]