MmuEX6053669 @ mm10
Exon Skipping
Gene
ENSMUSG00000022371 | Col14a1
Description
collagen, type XIV, alpha 1 [Source:MGI Symbol;Acc:MGI:1341272]
Coordinates
chr15:55380727-55386342:+
Coord C1 exon
chr15:55380727-55380856
Coord A exon
chr15:55382426-55382571
Coord C2 exon
chr15:55386213-55386342
Length
146 bp
Sequences
Splice sites
3' ss Seq
CAAAGAGCCTTTTCTTGCAGTGG
3' ss Score
2.8
5' ss Seq
GAGGTAACT
5' ss Score
8.77
Exon sequences
Seq C1 exon
GTGGTGGTGGATGGGAGTGTATCTTCCACAGTGTTGAAAAACTTGATGTCTTCAACTGAGTACCAGATAGCAGTGTTTGCAGTATCTGCCCACACAGCTAGTGAAGGCCTGCGGGGAGCAGAGACCACAT
Seq A exon
TGGCCTTGCCCATGGCTTCCGACCTCGAGCTGTACGACGTGACTGAGAACAGCATGCGCGTCAGGTGGGATGCAGTACCTGGAGCCACAGGCTATCTGATCCTCTATGCTCCTCTCACAGAAGGTCTGGCTGGAGATGAGAAAGAG
Seq C2 exon
ATGAAAATTGGAGAGACACACACAGACATTGAACTGAGTGGGCTATTCCCCAATACAGAATATACAGTCACTGTGTATGCCATGTTTGGAGAAGAGGCCAGCGATCCTGCTACAGGACAAGAGACAACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022371-'9-17,'9-12,12-17=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.068 A=0.082 C2=0.386
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(43.8=79.5)
A:
PF0004116=fn3=PU(54.9=91.8)
C2:
PF0004116=fn3=PD(42.7=79.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGCCCTTGCCACCATC
R:
TCATCAATTGATCCTCACCAAGACC
Band lengths:
243-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types