MmuEX6053668 @ mm10
Exon Skipping
Gene
ENSMUSG00000022371 | Col14a1
Description
collagen, type XIV, alpha 1 [Source:MGI Symbol;Acc:MGI:1341272]
Coordinates
chr15:55382426-55388689:+
Coord C1 exon
chr15:55382426-55382571
Coord A exon
chr15:55386213-55386342
Coord C2 exon
chr15:55388550-55388689
Length
130 bp
Sequences
Splice sites
3' ss Seq
ATTGCATGTGTCCTTTTCAGATG
3' ss Score
10.67
5' ss Seq
CCCGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
TGGCCTTGCCCATGGCTTCCGACCTCGAGCTGTACGACGTGACTGAGAACAGCATGCGCGTCAGGTGGGATGCAGTACCTGGAGCCACAGGCTATCTGATCCTCTATGCTCCTCTCACAGAAGGTCTGGCTGGAGATGAGAAAGAG
Seq A exon
ATGAAAATTGGAGAGACACACACAGACATTGAACTGAGTGGGCTATTCCCCAATACAGAATATACAGTCACTGTGTATGCCATGTTTGGAGAAGAGGCCAGCGATCCTGCTACAGGACAAGAGACAACCC
Seq C2 exon
TACCCTTAACCCCACCAAGAAATTTGCGGATCTCCAATGTTGGCTCTAACAGCGCTCGGTTAACCTGGGACCCCGCATCGGGAAAGATCAGTGGTTACAGAATTGTGTATACCAGTGCAGACGGGACAGAAATCAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022371-'9-17,'9-13,13-17=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.082 A=0.386 C2=0.213
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(54.9=91.8)
A:
PF0004116=fn3=PD(42.7=79.5)
C2:
PF0004116=fn3=PU(54.4=91.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGCCCTTGCCACCATC
R:
TCATCAATTGATCCTCACCAAGACC
Band lengths:
243-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types