BtaEX6063486 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013369 | COL14A1
Description
collagen, type XIV, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2191]
Coordinates
chr14:83951216-83959329:+
Coord C1 exon
chr14:83951216-83951361
Coord A exon
chr14:83954862-83954991
Coord C2 exon
chr14:83959190-83959329
Length
130 bp
Sequences
Splice sites
3' ss Seq
ATAATGTGTGTTCTTTACAGGTG
3' ss Score
11.33
5' ss Seq
CACGTGAGT
5' ss Score
9.3
Exon sequences
Seq C1 exon
TTTCTTTACCTATAGCTTCCGACCTTGAACTGTACGACGTGACTGAGAACAGTCTGAGGGCGAGATGGAACCCCGTGCCCGGAGCGTCCGGGTACCTGATCCTCTATGCTCCCCTCACGGAGGGCCTGGCCGGGGATGAAAAAGAG
Seq A exon
GTGAAAATTGGAGAGACCCACACAGATATTGAGCTGAGCGGGTTGTTGCCCAATACGGAATACACAGTCACGGTGTACGCTATGTTTGGAGAAGAAGCCAGTGACCCCGTTACGGGCCAGGAATCGACAC
Seq C2 exon
TACCCTTAAGCCCACCCAGAAACCTGAGAATCTCCAATATTGGCTCTAACAGTGCTCGGTTAGCCTGGGATGCCACTTCAACAAAGATCAATGGTTATCGAATTATATATAACAACGCTGATGGGACTGAAATCAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013369-'13-21,'13-20,14-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.041 A=0.205 C2=0.170
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(54.9=91.8)
A:
PF0004116=fn3=PD(42.7=79.5)
C2:
PF0004116=fn3=PU(54.4=91.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACCTTGAACTGTACGACGT
R:
TTCAGTCCCATCAGCGTTGTT
Band lengths:
258-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]