GgaEX6022199 @ galGal4
Exon Skipping
Gene
ENSGALG00000016411 | col14A1
Description
collagen alpha-1(XIV) chain precursor [Source:RefSeq peptide;Acc:NP_990665]
Coordinates
chr2:136411444-136416387:+
Coord C1 exon
chr2:136411444-136411589
Coord A exon
chr2:136412904-136413033
Coord C2 exon
chr2:136416248-136416387
Length
130 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTATGATGTTTTTAGATA
3' ss Score
8.1
5' ss Seq
CATGTGGGT
5' ss Score
2.93
Exon sequences
Seq C1 exon
TTGCCTTGCCAATGGCATCAGATCTGAAACTGTATGATGTGTCACACAGCAGCATGAGAGCTAAGTGGAATGGAGTAGCGGGTGCCACAGGTTACATGATCTTGTATGCTCCCCTGACAGAAGGGTTGGCTGCAGATGAAAAGGAG
Seq A exon
ATAAAAATTGGTGAGGCCTCAACTGAACTTGAACTGGATGGACTATTGCCGAATACAGAATATACAGTCACAGTTTATGCCATGTTTGGAGAAGAAGCTAGTGATCCCCTTACTGGACAAGAAACAACAT
Seq C2 exon
TACCTCTAAGTCCCCCATCAAACTTGAAGTTTTCTGATGTTGGACACAATCGTGCTAAGCTAACATGGGATCCTGCTTCCAAAAATGTGAAGGGCTATCGCATCATGTACGTTAAAACAGATGGAACAGAAACCAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016411-'18-27,'18-24,19-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.205 C2=0.277
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(54.9=91.8)
A:
PF0004116=fn3=PD(42.7=79.5)
C2:
PF0004116=fn3=PU(54.4=91.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCACACAGCAGCATGAGA
R:
TCATTGGTTTCTGTTCCATCTGT
Band lengths:
247-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]