Special

RnoEX0022850 @ rn6

Exon Skipping

Gene
Description
collagen type XIV alpha 1 chain [Source:RGD Symbol;Acc:1305806]
Coordinates
chr7:95133191-95139756:+
Coord C1 exon
chr7:95133191-95133336
Coord A exon
chr7:95137134-95137263
Coord C2 exon
chr7:95139617-95139756
Length
130 bp
Sequences
Splice sites
3' ss Seq
ATTGCATGTGTCTTTTTCAGATG
3' ss Score
11.34
5' ss Seq
CCCGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
TGGCCTTACCCATGGCTTCCGACCTCGAGCTGTATGATGTGACTGAGAACAGCATGCGAGTCAAGTGGGATGCAGTGCCTGGCGCCACAGGATATCTGATCCTCTATGCTCCTCTCACAGAAGGTCTGGCCGGAGATGAAAAAGAG
Seq A exon
ATGAAAATCGGTGAGACACACACAGACATTGAACTGAGTGGGCTATTCCCCAATACAGAATATACAGTCACTGTGTATGCCATGTTTGGAGAAGAGGCCAGTGACCCTGCTACAGGACAAGAGACAACCC
Seq C2 exon
TACCCTTAACCCCACCAAGAAATTTGAGGATCTCCAATGTCGGCTCTAACAGCGCTCGGTTAACCTGGGATCCCACATCGGGAAAGATCACTGGTTACAGAATTGTGTACACCAGTGCCGACGGGACAGAAATCAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026415-'13-15,'13-14,14-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.082 A=0.386 C2=0.277
Domain overlap (PFAM):

C1:
PF0004116=fn3=PU(54.9=91.8)
A:
PF0004116=fn3=PD(42.7=79.5)
C2:
PF0004116=fn3=PU(54.4=91.5)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACTGAGAACAGCATGCGA
R:
ATTGATTTCTGTCCCGTCGGC
Band lengths:
245-375
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]