MmuEX6053668 @ mm9
Exon Skipping
Gene
ENSMUSG00000022371 | Col14a1
Description
collagen, type XIV, alpha 1 [Source:MGI Symbol;Acc:MGI:1341272]
Coordinates
chr15:55213981-55220244:+
Coord C1 exon
chr15:55213981-55214126
Coord A exon
chr15:55217768-55217897
Coord C2 exon
chr15:55220105-55220244
Length
130 bp
Sequences
Splice sites
3' ss Seq
ATTGCATGTGTCCTTTTCAGATG
3' ss Score
10.67
5' ss Seq
CCCGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
TGGCCTTGCCCATGGCTTCCGACCTCGAGCTGTACGACGTGACTGAGAACAGCATGCGCGTCAGGTGGGATGCAGTACCTGGAGCCACAGGCTATCTGATCCTCTATGCTCCTCTCACAGAAGGTCTGGCTGGAGATGAGAAAGAG
Seq A exon
ATGAAAATTGGAGAGACACACACAGACATTGAACTGAGTGGGCTATTCCCCAATACAGAATATACAGTCACTGTGTATGCCATGTTTGGAGAAGAGGCCAGCGATCCTGCTACAGGACAAGAGACAACCC
Seq C2 exon
TACCCTTAACCCCACCAAGAAATTTGCGGATCTCCAATGTTGGCTCTAACAGCGCTCGGTTAACCTGGGACCCCGCATCGGGAAAGATCAGTGGTTACAGAATTGTGTATACCAGTGCAGACGGGACAGAAATCAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022371-'11-13,'11-12,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.082 A=0.386 C2=0.213
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(54.9=91.8)
A:
PF0004116=fn3=PD(42.7=79.5)
C2:
PF0004116=fn3=PU(54.4=91.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGTACGACGTGACTGAGA
R:
TCCCGTCTGCACTGGTATACA
Band lengths:
245-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: