BtaEX6063488 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013369 | COL14A1
Description
collagen, type XIV, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2191]
Coordinates
chr14:83947769-83951361:+
Coord C1 exon
chr14:83947769-83947920
Coord A exon
chr14:83949069-83949198
Coord C2 exon
chr14:83951216-83951361
Length
130 bp
Sequences
Splice sites
3' ss Seq
TCGAACTCCTCTTTAAACAGGTG
3' ss Score
8.7
5' ss Seq
CACGTGTGT
5' ss Score
3.78
Exon sequences
Seq C1 exon
CCTCAGCCCTTGCCACCGTGGGGCCGCCTACAGAACTGATGACTTCTGAAGTCACTGCCAGGAGCTTTATGGTTAACTGGACTCATGCCCCCGGAAAAGTGGAAAAATACAGAATCGTGTATTACCCTACCAGGGGTGGCAAACCAGAGGAG
Seq A exon
GTGGTGGTGGATGGACGCGTATCTTCCACGGTGCTGAGAAACTTGATGTCTTTAACGGAATATCAGATAGCAGTCTTTGCCATATATGCTCACACGGCTAGTGAAGGCCTCCGGGGAACCGAAACCACAC
Seq C2 exon
TTTCTTTACCTATAGCTTCCGACCTTGAACTGTACGACGTGACTGAGAACAGTCTGAGGGCGAGATGGAACCCCGTGCCCGGAGCGTCCGGGTACCTGATCCTCTATGCTCCCCTCACGGAGGGCCTGGCCGGGGATGAAAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013369-'11-19,'11-18,12-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.098 A=0.068 C2=0.041
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(53.8=84.3)
A:
PF0004116=fn3=PD(43.8=79.5)
C2:
PF0004116=fn3=PU(54.9=91.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGCCTACAGAACTGATGAC
R:
CGTGAGGGGAGCATAGAGGAT
Band lengths:
249-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]