RnoEX6032276 @ rn6
Exon Skipping
Gene
ENSRNOG00000026415 | Col14a1
Description
collagen type XIV alpha 1 chain [Source:RGD Symbol;Acc:1305806]
Coordinates
chr7:95130387-95133336:+
Coord C1 exon
chr7:95130387-95130538
Coord A exon
chr7:95131599-95131728
Coord C2 exon
chr7:95133191-95133336
Length
130 bp
Sequences
Splice sites
3' ss Seq
GCAAACCGTTCTTTCAACAGGTG
3' ss Score
10.13
5' ss Seq
CATGTGTGT
5' ss Score
2.6
Exon sequences
Seq C1 exon
CCTCAGCCCTTGCCACCATTGGGCCACCTACAGAGCTGATTACGTCTGAAGTCACCGCCAGGAGCTTTATGGTTAACTGGACTCACTCCCCAGGAAAAGTGGAAAAATACAGAGTTGTGTATTATCCCACCAGAGGTGGAAAGCCAGAGGAG
Seq A exon
GTGGTGGCGGATGGAAGGGTGTCTTCCATAGTGTTGAAAAACTTGATGTCTTCAACCGAGTACCAGATAGCAGTGTTTGCAGTATCTGCCCACACGGCTAGTGAAGGCCTGCGGGGAACAGAGACCACAT
Seq C2 exon
TGGCCTTACCCATGGCTTCCGACCTCGAGCTGTATGATGTGACTGAGAACAGCATGCGAGTCAAGTGGGATGCAGTGCCTGGCGCCACAGGATATCTGATCCTCTATGCTCCTCTCACAGAAGGTCTGGCCGGAGATGAAAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026415-'11-12,'11-11,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.059 A=0.068 C2=0.082
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(53.8=84.3)
A:
PF0004116=fn3=PD(43.8=79.5)
C2:
PF0004116=fn3=PU(54.9=91.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACCGCCAGGAGCTTTATG
R:
TTTTTCATCTCCGGCCAGACC
Band lengths:
245-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]