HsaEX6082152 @ hg38
Exon Skipping
Gene
ENSG00000187955 | COL14A1
Description
collagen type XIV alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2191]
Coordinates
chr8:120206943-120209901:+
Coord C1 exon
chr8:120206943-120207094
Coord A exon
chr8:120208232-120208361
Coord C2 exon
chr8:120209756-120209901
Length
130 bp
Sequences
Splice sites
3' ss Seq
TCAAACTGTTCTTTAAACAGGTG
3' ss Score
10.51
5' ss Seq
CACGTATGT
5' ss Score
7.26
Exon sequences
Seq C1 exon
CCTCAGCCCATGCCATCACTGGGCCGCCTACGGAGTTGATTACTTCTGAAGTCACTGCCAGAAGCTTTATGGTTAACTGGACTCATGCCCCAGGAAATGTGGAAAAATACAGAGTTGTGTATTATCCTACCAGGGGTGGAAAACCAGACGAG
Seq A exon
GTGGTGGTAGATGGAACTGTATCTTCCACAGTGTTGAAAAACTTGATGTCTTTAACTGAATATCAGATAGCAGTCTTTGCAATCTATGCCCACACTGCTAGTGAAGGCCTACGGGGAACTGAAACTACAC
Seq C2 exon
TTGCTTTACCGATGGCTTCTGACCTTCTACTGTACGACGTGACTGAGAACAGCATGCGAGTCAAATGGGATGCAGTGCCTGGGGCCTCAGGTTACCTGATCCTTTATGCTCCTCTAACAGAGGGCCTGGCTGGGGATGAAAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187955-'25-26,'25-25,26-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.096 A=0.048 C2=0.041
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(53.8=84.3)
A:
PF0004116=fn3=PD(43.8=79.5)
C2:
PF0004116=fn3=PU(54.9=91.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAAGTCACTGCCAGAAGCT
R:
TCTTTTTCATCCCCAGCCAGG
Band lengths:
252-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains