HsaEX6082152 @ hg19
Exon Skipping
Gene
ENSG00000187955 | COL14A1
Description
collagen, type XIV, alpha 1 [Source:HGNC Symbol;Acc:2191]
Coordinates
chr8:121219182-121222140:+
Coord C1 exon
chr8:121219182-121219333
Coord A exon
chr8:121220471-121220600
Coord C2 exon
chr8:121221995-121222140
Length
130 bp
Sequences
Splice sites
3' ss Seq
TCAAACTGTTCTTTAAACAGGTG
3' ss Score
10.51
5' ss Seq
CACGTATGT
5' ss Score
7.26
Exon sequences
Seq C1 exon
CCTCAGCCCATGCCATCACTGGGCCGCCTACGGAGTTGATTACTTCTGAAGTCACTGCCAGAAGCTTTATGGTTAACTGGACTCATGCCCCAGGAAATGTGGAAAAATACAGAGTTGTGTATTATCCTACCAGGGGTGGAAAACCAGACGAG
Seq A exon
GTGGTGGTAGATGGAACTGTATCTTCCACAGTGTTGAAAAACTTGATGTCTTTAACTGAATATCAGATAGCAGTCTTTGCAATCTATGCCCACACTGCTAGTGAAGGCCTACGGGGAACTGAAACTACAC
Seq C2 exon
TTGCTTTACCGATGGCTTCTGACCTTCTACTGTACGACGTGACTGAGAACAGCATGCGAGTCAAATGGGATGCAGTGCCTGGGGCCTCAGGTTACCTGATCCTTTATGCTCCTCTAACAGAGGGCCTGGCTGGGGATGAAAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187955-'14-19,'14-18,15-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=0.051 C2=0.041
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(53.8=84.3)
A:
PF0004116=fn3=PD(43.8=79.5)
C2:
PF0004116=fn3=PU(54.9=91.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAAGTCACTGCCAGAAGCT
R:
TCTTTTTCATCCCCAGCCAGG
Band lengths:
252-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)