BtaEX6063489 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013369 | COL14A1
Description
collagen, type XIV, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2191]
Coordinates
chr14:83941923-83949198:+
Coord C1 exon
chr14:83941923-83942084
Coord A exon
chr14:83947769-83947920
Coord C2 exon
chr14:83949069-83949198
Length
152 bp
Sequences
Splice sites
3' ss Seq
TTCTGTGTTTTTTGATTTAGCCT
3' ss Score
8.58
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GGGTGAAAAACGCGGACGAGAAGGAGCTGCAGGAGATCGCCTCCGAGCCGGACAGCACGCACGTGTACAACGTGGCCGAGTTTGACCTGATGCACACGGTTGTGGAGAGCCTCACGAGGACCGTGTGCTCCAGGGTGGAGGAGCAGGACCGCGAGATCAAAG
Seq A exon
CCTCAGCCCTTGCCACCGTGGGGCCGCCTACAGAACTGATGACTTCTGAAGTCACTGCCAGGAGCTTTATGGTTAACTGGACTCATGCCCCCGGAAAAGTGGAAAAATACAGAATCGTGTATTACCCTACCAGGGGTGGCAAACCAGAGGAG
Seq C2 exon
GTGGTGGTGGATGGACGCGTATCTTCCACGGTGCTGAGAAACTTGATGTCTTTAACGGAATATCAGATAGCAGTCTTTGCCATATATGCTCACACGGCTAGTGAAGGCCTCCGGGGAACCGAAACCACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013369-'9-18,'9-17,11-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.176 A=0.098 C2=0.068
Domain overlap (PFAM):
C1:
PF0009223=VWA=PD(21.4=67.3)
A:
PF0004116=fn3=PU(53.8=84.3)
C2:
PF0004116=fn3=PD(43.8=79.5)
Main Skipping Isoform:
ENSBTAT00000017783fB1835
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAAACGCGGACGAGAAGGA
R:
GCCGTGTGAGCATATATGGCA
Band lengths:
256-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]