DreEX0022964 @ danRer10
Exon Skipping
Gene
ENSDARG00000005762 | col14a1a
Description
collagen, type XIV, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9889]
Coordinates
chr16:14820282-14919325:+
Coord C1 exon
chr16:14820282-14820403
Coord A exon
chr16:14911629-14911786
Coord C2 exon
chr16:14919196-14919325
Length
158 bp
Sequences
Splice sites
3' ss Seq
GATTTCCTCGCAATTAACAGAAG
3' ss Score
4.2
5' ss Seq
GAGGTGACT
5' ss Score
5.88
Exon sequences
Seq C1 exon
GTGCGGGGCAAGCATCACTCACTTGGCTGTAAGGATGCAGGTGTCGGGATCCAGGATTAAGCTGTGGTGTCCGCTTATCTCGCTGGCACTGATTCAGTTTCTTGCCCCTGTTTCAGCTCAAG
Seq A exon
AAGATTCTGTCCCCGAGGAGACTGTGTCAACTCCTCTGAACCTGCTCATTTCTGAGGTGACGGCACACAGTTTCCGAGTGTCCTGGACTCATTCGGCTGGCAAGGTGGAAAAGTATCGTGTGGTTTACCATCCGACCGATGCAGACATTCCAGAAGAG
Seq C2 exon
ATTGTGGTGGGCGGTTTGGAGAATTCTGTGGTCCTGCAGAACTTGAACTCTCTGACTGAATACGAGATTGCAGTGTTCGCTGTGTATCGCAGCGCAGCGAGTGATGCTCTCAGAGGCAGCGAGATCACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005762_MULTIEX1-8/25=C1-9
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.094 C2=0.000
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(19.2=33.3)
A:
PF0004116=fn3=PU(54.4=81.1)
C2:
PF0004116=fn3=PD(43.0=77.3)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGCATCACTCACTTGGCT
R:
TGATCTCGCTGCCTCTGAGAG
Band lengths:
242-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]