GgaEX1065995 @ galGal4
Exon Skipping
Gene
ENSGALG00000016411 | col14A1
Description
collagen alpha-1(XIV) chain precursor [Source:RefSeq peptide;Acc:NP_990665]
Coordinates
chr2:136404675-136407605:+
Coord C1 exon
chr2:136404675-136404836
Coord A exon
chr2:136406296-136406447
Coord C2 exon
chr2:136407476-136407605
Length
152 bp
Sequences
Splice sites
3' ss Seq
TTCTGTTGTCTGTAACCTAGGAA
3' ss Score
6.94
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GTGTGAAGAATGCAGATATAAATGAACTCAAAGAAATTGCCTCTGAACCTGACAGTACACACGTTTACAATGTTGCTGACTTCAACTTCATGAATTCTATTGTCGAAGGGCTTACCAGAACAGTGTGTTCACGAGTAGAGGAACAGGAAAAGGAAATCAAAG
Seq A exon
GAACAATTGCTGCTTCACTTGGAGCTCCCACAGATTTGGTCACATCTGATATAACAGCTAGAGGATTCCGTGTTAGCTGGACTCATTCTCCAGGCAAAGTGGAAAAATACAGAGTTGTGTATTATCCCACTCGAGGAGGACAGCCTGAAGAG
Seq C2 exon
GTTGTGGTAGATGGAAGTTCATCAACGGCAGTTCTTAAAAACCTGATGTCTTTAACCGAATACCAGATCGCTGTATTTGCAATATACTCAAATGCTGCTAGTGAGGGCCTCCGTGGAACTGAAACTACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016411-'15-20,'15-19,16-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=0.020 C2=0.091
Domain overlap (PFAM):
C1:
PF0009223=VWA=PD(21.4=67.3)
A:
PF0004116=fn3=PU(53.8=84.3)
C2:
PF0004116=fn3=PD(43.8=79.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTCTGAACCTGACAGTACA
R:
TAGTTTCAGTTCCACGGAGGC
Band lengths:
252-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]