RnoEX6032277 @ rn6
Exon Skipping
Gene
ENSRNOG00000026415 | Col14a1
Description
collagen type XIV alpha 1 chain [Source:RGD Symbol;Acc:1305806]
Coordinates
chr7:95124923-95131728:+
Coord C1 exon
chr7:95124923-95125084
Coord A exon
chr7:95130387-95130538
Coord C2 exon
chr7:95131599-95131728
Length
152 bp
Sequences
Splice sites
3' ss Seq
GGTGTATTTCCTTCATTTAGCCT
3' ss Score
5.16
5' ss Seq
GAGGTAACA
5' ss Score
8.1
Exon sequences
Seq C1 exon
GGGTTAAAAATGCCGACCTGAGCGAGCTGCAGGAGATAGCCTCTGAGCCAGACAGCACCCATGTGTACAATGTCGCTGAGTTCGACCTGATGCACACAGTGGTGGAGAGCCTGACCCGGACCGTATGCTCCAGAGTGGAAGAGCAGGACAAGGAGATTAAAG
Seq A exon
CCTCAGCCCTTGCCACCATTGGGCCACCTACAGAGCTGATTACGTCTGAAGTCACCGCCAGGAGCTTTATGGTTAACTGGACTCACTCCCCAGGAAAAGTGGAAAAATACAGAGTTGTGTATTATCCCACCAGAGGTGGAAAGCCAGAGGAG
Seq C2 exon
GTGGTGGCGGATGGAAGGGTGTCTTCCATAGTGTTGAAAAACTTGATGTCTTCAACCGAGTACCAGATAGCAGTGTTTGCAGTATCTGCCCACACGGCTAGTGAAGGCCTGCGGGGAACAGAGACCACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026415-'10-11,'10-10,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.055 A=0.059 C2=0.068
Domain overlap (PFAM):
C1:
PF0009223=VWA=PD(21.4=67.3)
A:
PF0004116=fn3=PU(53.8=84.3)
C2:
PF0004116=fn3=PD(43.8=79.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTGCAGGAGATAGCCTCT
R:
AGGCCTTCACTAGCCGTGT
Band lengths:
249-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]