BtaEX6063492 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013369 | COL14A1
Description
collagen, type XIV, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2191]
Coordinates
chr14:83935537-83938905:+
Coord C1 exon
chr14:83935537-83935692
Coord A exon
chr14:83936667-83936786
Coord C2 exon
chr14:83938741-83938905
Length
120 bp
Sequences
Splice sites
3' ss Seq
TTCTCGTCCTTCTTTTCCAGGCC
3' ss Score
11.84
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
AAGTGAAATTTTTCTGTCAAACACCGGCTATTGCTGATATTGTAATCCTGGTCGATGGCTCATGGAGTATTGGAAGATTCAACTTCAGACTGGTTCGATCTTTTTTGGAAAACCTGGTTACAGCATTTGACGTGGGCTCCGAGAAGACACGAATTG
Seq A exon
GCCTGGCTCAGTACAGTGGTGACCCCAGAATTGAATGGCACTTGAATGCCTTTAACACCAAAGACGAGGTGATCGACGCTGTCCGCAATCTACCATACAAGGGGGGAAATACTCTCACAG
Seq C2 exon
GTCTTGCTTTGAATTACATTTTTGAAAACAGTTTTAAACCGGAAGCGGGAGCAAGGACTGGAGTGTCCAAAATTGGCATTTTAATCACAGACGGAAAGTCCCAAGATGATATCATTCCACCATCCAGAAACCTTCGTGAATCTGGTGTAGAGCTGTTTGCCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013369-'6-14,'6-13,7-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.065
Domain overlap (PFAM):
C1:
PF0009223=VWA=PU(23.1=75.5)
A:
PF0009223=VWA=FE(23.1=100)
C2:
PF0009223=VWA=FE(31.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCGATGGCTCATGGAGTA
R:
ACGAAGGTTTCTGGATGGTGG
Band lengths:
245-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]