RnoEX6032280 @ rn6
Exon Skipping
Gene
ENSRNOG00000026415 | Col14a1
Description
collagen type XIV alpha 1 chain [Source:RGD Symbol;Acc:1305806]
Coordinates
chr7:95115181-95119013:+
Coord C1 exon
chr7:95115181-95115336
Coord A exon
chr7:95116185-95116304
Coord C2 exon
chr7:95118849-95119013
Length
120 bp
Sequences
Splice sites
3' ss Seq
TTCTCTTCCTTCTTTTCCAGGCT
3' ss Score
11.9
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
AAATAAAATTCTTCTGCGAGACTCCAGCCATCGCTGACATTGTCATCCTGGTGGATGGATCATGGAGTATTGGGAGATTCAACTTCAGGCTGGTGCGCAATTTCTTGGAAAACCTGGTCACAGCGTTCAACGTGGGCTCAGAAAAGACAAGAATTG
Seq A exon
GCTTGGCACAGTACAGTGGGGACCCTAGAATAGAGTGGCACCTGAATGCCTTTAACACGAAAGATGAAGTGATTGACGCTGTCCGAAGCCTTCCATACAAAGGAGGAAATACCCTAACAG
Seq C2 exon
GTCTTGCTTTGAACTTTATTTTTGAGAATAGCTTTAAGCCAGAAGCAGGATCGAGGAGTGGCGTTTCCAAGATTGGCATTTTAATCACAGATGGAAAGTCCCAGGATGATATTATCCCACCTTCTAGAAACCTCCGTGAGGCTGGTGTAGAGTTGTTTGCAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026415-'6-8,'6-7,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.054
Domain overlap (PFAM):
C1:
PF0009223=VWA=PU(23.1=75.5)
A:
PF0009223=VWA=FE(23.1=100)
C2:
PF0009223=VWA=FE(31.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGGTGGATGGATCATGGA
R:
CGGAGGTTTCTAGAAGGTGGGA
Band lengths:
247-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]