MmuEX6053674 @ mm10
Exon Skipping
Gene
ENSMUSG00000022371 | Col14a1
Description
collagen, type XIV, alpha 1 [Source:MGI Symbol;Acc:MGI:1341272]
Coordinates
chr15:55362382-55366213:+
Coord C1 exon
chr15:55362382-55362537
Coord A exon
chr15:55363451-55363570
Coord C2 exon
chr15:55366049-55366213
Length
120 bp
Sequences
Splice sites
3' ss Seq
TTCTCTTCCTTCTTTTCCAGGCT
3' ss Score
11.9
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
AGGTAAAATTCTTCTGTGAGACTCCAGCCATCGCTGACATCGTCATCCTGGTGGATGGGTCGTGGAGTATTGGGAGGTTCAACTTCAGGCTTGTGCGCAATTTCTTGGAAAACCTGGTCACAGCGTTCAACGTGGGCTCAGAAAAGACAAGAATCG
Seq A exon
GCTTGGCACAGTACAGTGGGGACCCCAGAATAGAGTGGCACTTGAATGCCTTTAACACAAAAGATGAGGTGATTGATGCTGTCCGAAGCCTTCCATACAAAGGAGGAAATACCCTAACAG
Seq C2 exon
GTCTTGCTTTGAACTTTATTTTTGAGAATAGCTTTAAACCAGAAGCAGGATCGAGGAGTGGAGTTTCCAAGATTGGCATTTTGATCACAGATGGAAAATCCCAGGATGATATTATCCCACCATCTAGAAACCTCCGTGAGTCTGGTGTAGAGCTGTTTGCCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022371-'1-17,'1-7,6-17=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.071
Domain overlap (PFAM):
C1:
PF0009223=VWA=PU(23.1=75.5)
A:
PF0009223=VWA=FE(23.1=100)
C2:
PF0009223=VWA=FE(31.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTGTTGCACCTGATGTAAGA
R:
AGTCATCAATTGATCCTCACCA
Band lengths:
218-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types