GgaEX6022203 @ galGal4
Exon Skipping
Gene
ENSGALG00000016411 | col14A1
Description
collagen alpha-1(XIV) chain precursor [Source:RefSeq peptide;Acc:NP_990665]
Coordinates
chr2:136402696-136404271:+
Coord C1 exon
chr2:136402696-136402851
Coord A exon
chr2:136403117-136403236
Coord C2 exon
chr2:136404107-136404271
Length
120 bp
Sequences
Splice sites
3' ss Seq
CTTTTATTTTGGTACATCAGGTC
3' ss Score
5.35
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
GAAACCTGTTTACCTGTAAAACTCCAGCTATTGCAGATATTGTGATTCTAGTAGATGGCTCCTGGAGTATTGGCCGATTCAATTTCAGACTTGTTCGACTATTCCTGGAAAATCTCGTTTCTGCTTTCAATGTGGGGTCTGAGAAAACAAGAGTAG
Seq A exon
GTCTTGCACAGTACAGTGGTGATCCCCGAATTGAATGGCATTTGAATGCCTATGGCACAAAAGATGCTGTCTTGGATGCAGTCCGTAATCTACCATATAAAGGAGGGAATACGCTAACAG
Seq C2 exon
GTCTTGCGTTAACTTACATTTTGGAGAACAGCTTTAAGCCTGAAGCTGGTGCAAGGCCTGGGGTATCTAAAATCGGTATATTGATCACCGATGGGAAATCCCAAGATGATGTTATCCCTCCTGCTAAAAACCTACGGGATGCAGGCATTGAGCTGTTTGCTATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016411-'12-17,'12-16,13-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.000 C2=0.054
Domain overlap (PFAM):
C1:
PF0009223=VWA=PU(23.1=75.5)
A:
PF0009223=VWA=FE(23.1=100)
C2:
PF0009223=VWA=FE(31.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGCTCCTGGAGTATTGGC
R:
CTCAATGCCTGCATCCCGTAG
Band lengths:
255-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]