BtaEX6063493 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013369 | COL14A1
Description
collagen, type XIV, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2191]
Coordinates
chr14:83911139-83936786:+
Coord C1 exon
chr14:83911139-83911228
Coord A exon
chr14:83935537-83935692
Coord C2 exon
chr14:83936667-83936786
Length
156 bp
Sequences
Splice sites
3' ss Seq
TTTTGGTCTATACTTTGCAGAAG
3' ss Score
7.17
5' ss Seq
TTGGTGCAT
5' ss Score
-2.11
Exon sequences
Seq C1 exon
TTAAAGATTTAGAAAAAAGAAAGGAGCCAAAACCCAGAGTCAAAGTTGTGGACAAAGGAGGCGAGAACAAACCATCTGTACCCGAGGAAG
Seq A exon
AAGTGAAATTTTTCTGTCAAACACCGGCTATTGCTGATATTGTAATCCTGGTCGATGGCTCATGGAGTATTGGAAGATTCAACTTCAGACTGGTTCGATCTTTTTTGGAAAACCTGGTTACAGCATTTGACGTGGGCTCCGAGAAGACACGAATTG
Seq C2 exon
GCCTGGCTCAGTACAGTGGTGACCCCAGAATTGAATGGCACTTGAATGCCTTTAACACCAAAGACGAGGTGATCGACGCTGTCCGCAATCTACCATACAAGGGGGGAAATACTCTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013369-'5-13,'5-12,6-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.581 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0009223=VWA=PU(23.1=75.5)
C2:
PF0009223=VWA=FE(23.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAAGGAGCCAAAACCCAGA
R:
CCCCCTTGTATGGTAGATTGCG
Band lengths:
178-334
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]