RnoEX6032281 @ rn6
Exon Skipping
Gene
ENSRNOG00000026415 | Col14a1
Description
collagen type XIV alpha 1 chain [Source:RGD Symbol;Acc:1305806]
Coordinates
chr7:95092891-95116304:+
Coord C1 exon
chr7:95092891-95092980
Coord A exon
chr7:95115181-95115336
Coord C2 exon
chr7:95116185-95116304
Length
156 bp
Sequences
Splice sites
3' ss Seq
TTGTGGTTTGCCCTTTGCAGAAA
3' ss Score
9.44
5' ss Seq
TTGGTAAAA
5' ss Score
3.23
Exon sequences
Seq C1 exon
TTAAAGATTTAGAGAAAAGAAAGGATCCAACCAAGCCCAGAGTCAAGGCTGTGGACAAAGGAAACGGAAGTAAATCAACTTCACCAGAAG
Seq A exon
AAATAAAATTCTTCTGCGAGACTCCAGCCATCGCTGACATTGTCATCCTGGTGGATGGATCATGGAGTATTGGGAGATTCAACTTCAGGCTGGTGCGCAATTTCTTGGAAAACCTGGTCACAGCGTTCAACGTGGGCTCAGAAAAGACAAGAATTG
Seq C2 exon
GCTTGGCACAGTACAGTGGGGACCCTAGAATAGAGTGGCACCTGAATGCCTTTAACACGAAAGATGAAGTGATTGACGCTGTCCGAAGCCTTCCATACAAAGGAGGAAATACCCTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026415-'5-7,'5-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.677 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0009223=VWA=PU(23.1=75.5)
C2:
PF0009223=VWA=FE(23.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAGAGAAAAGAAAGGATCCAACCA
R:
CTGTTAGGGTATTTCCTCCTTTGT
Band lengths:
202-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]