HsaEX6082157 @ hg38
Exon Skipping
Gene
ENSG00000187955 | COL14A1
Description
collagen type XIV alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2191]
Coordinates
chr8:120168161-120197930:+
Coord C1 exon
chr8:120168161-120168247
Coord A exon
chr8:120196791-120196946
Coord C2 exon
chr8:120197811-120197930
Length
156 bp
Sequences
Splice sites
3' ss Seq
TTCTGGTTTGTGCTTTGCAGAAG
3' ss Score
8.31
5' ss Seq
TTGGTATAA
5' ss Score
-0.2
Exon sequences
Seq C1 exon
TTAAAGATTTAGAAAAAAGAAAGGATCCAAAGCCCAGAGTCAAAGTTGTGGACAGAGGAAATGGGAGTAGACCATCTTCACCAGAAG
Seq A exon
AAGTGAAATTTGTCTGTCAAACTCCAGCAATTGCTGACATTGTAATCCTGGTCGATGGTTCATGGAGTATTGGAAGATTCAACTTCAGACTGGTTCGGCATTTCTTGGAAAACCTGGTTACAGCATTCGATGTGGGCTCAGAGAAGACACGAATTG
Seq C2 exon
GTCTTGCACAGTATAGTGGTGACCCCAGAATAGAATGGCACTTGAATGCATTTAGCACAAAAGATGAAGTGATTGAAGCTGTCCGAAACCTCCCATATAAAGGAGGAAATACACTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187955-'19-21,'19-18,20-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.767 A=0.018 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0009223=VWA=PU(23.1=75.5)
C2:
PF0009223=VWA=FE(23.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAAAGGATCCAAAGCCCAGA
R:
AGTGTATTTCCTCCTTTATATGGGA
Band lengths:
186-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains